tag.medical_imaging.bib

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@article{SaCoGuTMI2017,
  author = {Sarikaya, D. and {\bf Corso}, {\bf J. J.} and Guru, K. A.},
  journal = {{IEEE Transactions on Medical Imaging}},
  number = {7},
  pages = {1542--1549},
  projects = {surgrobots, video, medimage},
  researcharea = {MI},
  tags = {deep learning, medical imaging, surgical robotics},
  title = {Detection and Localization of Robotic Tools in Robot-Assisted Surgery Videos Using Deep Neural Networks for Region Proposal and Detection},
  venue = {TMI},
  volume = {36},
  year = {2017}
}

@inproceedings{ZhChChSPIE2016,
  author = {Zhao, L. and Chan, D. and Chen, Z. and Wang, X. and Paliwal, N. and Xiang, J. and Meng, H. and {\bf Corso}, {\bf J. J.} and Xu, J.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  researcharea = {MI},
  tags = {medical imaging},
  title = {Rapid Virtual Stenting for Intracranial Aneurysms},
  url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=2505910},
  venue = {SPIE},
  year = {2016}
}

@incollection{ZhPeFi2015,
  author = {Zhao, L. and Peng, Z. and Finkler, K. and Jerebko, A. and {\bf Corso}, {\bf J. J.} and Zhou, X. S.},
  booktitle = {Patch-Based Techniques in Medical Imaging (LNCS 9467)},
  pages = {71--78},
  publisher = {Springer International Publishing},
  researcharea = {MI},
  tags = {medical imaging},
  title = {Automatic Collimation Detection in Digital Radiographs with the Directed Hough Transform and Learning-Based Edge Detection},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/zhao_patchbased_2015.pdf},
  year = {2015}
}

@article{MeJaBaTMI2015,
  author = {Menze, B. H. and Jakab, A. and Bauer, S. and Kalpathy-Cramer, J. and Farahani, K. and Kirby, J. and Burren, Y. and Porz, N. and Slotboom, J. and Wiest, R. and Lanczi, L. and Gerstner, R. and Weber, M.-A. and Arbel, T. and Avants, B. B. and Ayache, N. and Buendia, P. and Collins, D. L. and Cordier, N. and {\bf Corso}, {\bf J. J.} and Criminisi, A. and Das, T. and Delingette, H. and Demiralp, C. and Durst, C. R. and Dojat, M. and Doyle, S. and Festa, J. and Forbes, F. and Geremia, E. and Glocker, B. and Golland, P. and Guo, X. and Hamamci, A. and Iftekharuddin, K. M. and Jena, R. and John, N. M. and Konukoglu, E. and Lashkari, D. and Mariz, J. A. and Meier, R. and Pereira, S. and Precup, D. and Price, S. J. and {Riklin Raviv}, T. and Reza, S. and Ryan, M. and Sarikaya, D. and Schwartz, L. and Shin, H.-C. and Shotton, J. and Silva, C. A. and Sousa, N. and Subbanna, N. K. and Szekely, G. and Taylor, T. J. and Thomas, O. M. and Tustison, N. J. and Unal, G. and Vasseur, F. and Wintermark, M. and Ye, D. H. and Zhao, L. and Zhao, B. and Zikic, D. and Prastawa, M. and Reyes, M. and {Van Leemput}, K.},
  journal = {IEEE Transactions on Medical Imaging},
  number = {10},
  pages = {1993--2024},
  projects = {braintumor},
  publisher = {IEEE},
  researcharea = {MI},
  tags = {braintumor, medical imaging, segmentation},
  title = {The multimodal brain tumor image segmentation benchmark (BRATS)},
  url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6975210},
  venue = {TMI},
  volume = {34},
  year = {2015}
}

@inproceedings{BaBaChECCV2014,
  author = {Barbu, A. and Barrett, D. and Chen, W. and Siddharth, N. and Xiong, C. and {\bf Corso}, {\bf J. J.} and Fellbaum, C. D. and Hanson, C. and Hanson, S. J. and H{\'e}lie, S. and Malaia, E. and Pearlmutter, B. A. and Siskind, J. M. and Talavage, T. M. and Wilbur, R. B.},
  booktitle = {Proceedings of European Conference on Computer Vision},
  grants = {career, mindseye},
  projects = {career, mindseye},
  researcharea = {CV, MI},
  tags = {computer vision, activity recognition, video understanding, medical imaging, neuroimaging},
  title = {Seeing is Worse than Believing: Reading People's Minds Better Than Computer-Vision Methods Recognize Actions},
  url = {ftp://ftp.ecn.purdue.edu/qobi/eccv2014.pdf},
  venue = {ECCV},
  year = {2014}
}

@inproceedings{AlCoChMICCAIW2013,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  booktitle = {{Proceedings of Medical Image Computing and Computer Aided Intervention Workshop on Computational Spine Imaging}},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging},
  title = {Lumbar Spine Disc Herniation Diagnosis with a Joint Shape Model},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/alomari_miccaiw2013.pdf},
  venue = {MICCAIW},
  year = {2013}
}

@article{WuChZhIJCARS2014,
  author = {Wu, W. and Chen, A. Y. C. and Zhao, L. and {\bf Corso}, {\bf J. J.}},
  grants = {career},
  journal = {International Journal of Computer Aided Radiology and Surgery},
  number = {2},
  pages = {241--253},
  projects = {career, braintumor, medimage},
  researcharea = {MI},
  tags = {braintumor, computer-aided diagnosis, graphical models, medical imaging, mrf, neuroimaging, segmentation},
  title = {Brain Tumor Detection and Segmentation in a {CRF} (Conditional Random Fields) Framework with Pixel-pairwise Affinity and Superpixel-level Features},
  url = {http://link.springer.com/article/10.1007%2Fs11548-013-0922-7},
  venue = {IJCARS},
  volume = {9},
  year = {2014}
}

@inproceedings{KuNaSiCASE2013,
  author = {Kumar, S. and Narayanan, M. and Singhal, P. and {\bf Corso}, {\bf J. J.} and Krovi, V.},
  booktitle = {IEEE Conference on Automation Science and Engineering},
  projects = {medimage},
  researcharea = {SR},
  tags = {medical imaging, surgical robotics, tracking, video understanding},
  title = {Product of Tracking Experts for Surgical Tool Visual Tracking},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/kumar_case2013.pdf},
  venue = {CASE},
  year = {2013}
}

@inproceedings{ZhWuCoMICCAI2013,
  author = {Zhao, L. and Wu, W. and {\bf Corso}, {\bf J. J.}},
  booktitle = {Proceedings of Medical Image Computing and Computer Aided Intervention},
  grants = {career},
  projects = {braintumor,career},
  researcharea = {MI},
  tags = {medical imaging, graphical models, neuroimaging, braintumor},
  title = {Semi-Automatic Brain Tumor Segmentation by Constrained {MRFs} using Structural Trajectories},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/lzhao_miccai2013_structraj.pdf},
  venue = {MICCAI},
  year = {2013}
}

@inproceedings{GaXiCoSPIE2011,
  author = {Gagneja, D. and Xiong, C. and {\bf Corso}, {\bf J. J.}},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  grants = {career},
  projects = {career},
  researcharea = {MI},
  tags = {medical imaging, neuroimaging, graphical models},
  title = {Towards a Parts-Based Approach to Sub-Cortical Brain Structure Parsing},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/spie2011_neuroparts.pdf},
  venue = {SPIE},
  year = {2011}
}

@article{AlCoChIJCARS2011,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  journal = {International Journal of Computer Aided Radiology and Surgery},
  number = {1},
  pages = {119--126},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, computer-aided diagnosis},
  title = {Toward a Clinical Lumbar {CAD}: Herniation Diagnosis},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/alomari_ijcars2011.pdf},
  venue = {IJCARS},
  volume = {6},
  year = {2011}
}

@inproceedings{AlCoChCARS2010,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  booktitle = {Proceedings of the 24th International Conference on Computer Aided Diagnosis and Surgery (CARS '10)},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, computer-aided diagnosis, spine imaging},
  title = {Lumbar Disc Herniation CAD with a {GVF}-snake Model},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/alomari_cars2010.pdf},
  venue = {CARS},
  year = {2010}
}

@article{AlCoChTMI2011,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V.},
  grants = {career},
  journal = {IEEE Transactions on Medical Imaging},
  number = {1},
  pages = {1--10},
  projects = {lumbar,career},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, graphical models, semantic segmentation},
  title = {Labeling of Lumbar Discs using both Pixel- and Object-Level Features with a Two-Level Probabilistic Model},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/tmi2011_lumbar.pdf},
  venue = {TMI},
  volume = {30},
  year = {2011}
}

@article{NoWaXuCMPB2010,
  author = {No{\"e}l, P. B. and Walczak, A. and Xu, J. and {\bf Corso}, {\bf J. J.} and Hoffmann, K. R. and Schafer, S.},
  journal = {Computer Methods and Programs in Biomedicine},
  number = {3},
  pages = {271--277},
  projects = {cbct,gpumedical},
  researcharea = {MI},
  tags = {medical imaging, tomographic reconstruction, gpu},
  title = {{GPU}-based Cone Beam Computed Tomography},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/cmpb2010_gpucbct.pdf},
  venue = {CMPB},
  volume = {98},
  year = {2010}
}

@inproceedings{NoXuHoASCG2009,
  author = {No{\"e}l, P. and Xu, J. and Hoffmann, K. R. and {\bf Corso}, {\bf J. J.}},
  booktitle = {Proceedings of the 25th Annual Symposium on Computational Geometry},
  projects = {cbct},
  researcharea = {MI},
  tags = {medical imaging, tomographic reconstruction},
  title = {Geometric tomography: a limited-view approach for computed tomography},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/ascg2009-peter.pdf},
  venue = {ASCG},
  year = {2009}
}

@inproceedings{AlCoChSPIE2010,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, computer-aided diagnosis, spine imaging},
  title = {Automatic diagnosis of lumbar disc herniation using shape and appearance features from MRI},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/alomari_spie2010.pdf},
  venue = {SPIE},
  year = {2010}
}

@article{AlCoChIJCARS2010,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  journal = {International Journal of Computer Aided Radiology and Surgery},
  number = {3},
  pages = {287--293},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, computer-aided diagnosis},
  title = {Computer-aided Diagnosis of Lumbar Disc Pathology from Clinical Lower Spine {MRI}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/alomari_ijcars2010.pdf},
  venue = {IJCARS},
  volume = {5},
  year = {2010}
}

@inproceedings{TaLuDeMICCAI2009,
  author = {Tao, Y. and Lu, L. and Dewan, M. and Chen, A. Y. C. and {\bf Corso}, {\bf J. J.} and Xuan, J. and Salganicoff, M. and Krishnan, A.},
  booktitle = {Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI)},
  pages = {715--723},
  researcharea = {MI},
  tags = {medical imaging, segmentation, computer-aided diagnosis, lung imaging},
  title = {Multi-level Ground Glass Nodule Detection and Segmentation in CT Lung Images},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/miccai2009_ggn.pdf},
  venue = {MICCAI},
  volume = {LNCS 5762},
  year = {2009}
}

@inproceedings{AlCoChISBI2009,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  booktitle = {Proceedings of 2009 IEEE International Symposium on Biomedical Imaging},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, computer-aided diagnosis},
  title = {Desiccation Diagnosis in Lumbar Discs from Clinical MRI with a Probabilistic Model},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/isbi2009_lumbar.pdf},
  venue = {ISBI},
  year = {2009}
}

@inproceedings{AlCoChCARS2009,
  author = {Alomari, R. S. and {\bf Corso}, {\bf J. J.} and Chaudhary, V. and Dhillon, G.},
  booktitle = {Proceedings of 23rd International Congress and Exhibition on Computer Assisted Radiology and Surgery (CARS 2009)},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, computer-aided diagnosis},
  title = {Abnormality Detection in Lumbar Discs from Clinical MR Images with a Probabilistic Model},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/cars2009_abnormality.pdf},
  venue = {CARS},
  year = {2009}
}

@inproceedings{SeSmCoSPIE2009,
  author = {Seshamani, S. and Smith, M. D. and {\bf Corso}, {\bf J. J.} and Filipovich, M. O. and Natarajan, A. and Hager, G. D.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  researcharea = {MI},
  tags = {medical imaging, mosaicking, endoscopy},
  title = {{Direct Global Adjustment Methods for Endoscopic Mosaicking}},
  venue = {SPIE},
  year = {2009}
}

@inproceedings{NoCoXuSPIE2009,
  author = {No{\"e}l, P. B. and {\bf Corso}, {\bf J. J.} and Xu, J. and Hoffmann, K. R. and Schafer, S. and Walczak, A.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  projects = {cbct},
  researcharea = {MI},
  tags = {medical imaging, tomographic reconstruction},
  title = {{Reconstruction from a Flexible Number of Projections in Cone-Beam Computed Tomography via Active Shape Models}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/spiemi2009_reconstruction.pdf},
  venue = {SPIE},
  year = {2009}
}

@inproceedings{NoXuHoSPIE2009,
  author = {No{\"e}l, P. B. and Xu, J. and Hoffmann, K. R. and {\bf Corso}, {\bf J. J.} and Schafer, S. and Walczak, A.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  projects = {cbct},
  researcharea = {MI},
  tags = {medical imaging, tomographic reconstruction},
  title = {{High Contrast Artifact Reduction in Cone Beam Computed Tomography by Using Geometric Techniques}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/spiemi2009_artifact.pdf},
  venue = {SPIE},
  year = {2009}
}

@inproceedings{HoCoSPIE2009,
  author = {Hoeflich, C. S. and {\bf Corso}, {\bf J. J.}},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  researcharea = {MI},
  tags = {medical imaging, mrf, segmentation},
  title = {{Segmentation of 2D Gel Electrophoresis Spots using a Markov Random Field}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/hoeflich_SPIE2009.pdf},
  venue = {SPIE},
  year = {2009}
}

@inproceedings{NoWaHoHPMICCAI2008,
  author = {No{\"e}l, P. B. and Walczak, A. and Hoffmann, K. R. and Xu, J. and {\bf Corso}, {\bf J. J.} and Schafer, S.},
  booktitle = {Proceedings of High-Performance Medical Image Computing and Computer-Aided Intervention (HP-MICCAI)},
  projects = {gpumedical,cbct},
  researcharea = {MI},
  tags = {medical imaging, gpu, tomographic reconstruction, evaluation},
  title = {{Clinical Evaluation of GPU-Based Cone Beam Computed Tomography}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/hpmiccai2008_gpucbct.pdf},
  venue = {HPMICCAI},
  year = {2008}
}

@inproceedings{NwCoMICCAI2008,
  author = {Nwogu, I. and {\bf Corso},{\bf J. J.}},
  booktitle = {Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI)},
  pages = {612--619},
  researcharea = {MI},
  tags = {medical imaging, biomarkers, lung imaging, computer-aided diagnosis},
  title = {Exploratory Identification of Image-Based Bio-markers for Solid Mass Pulmonary Tumors},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/inwogu_MICCAI2008.pdf},
  venue = {MICCAI},
  volume = {LNCS 5241, Part 1},
  year = {2008}
}

@inproceedings{CoAlChMICCAI2008,
  author = {{\bf Corso},{\bf J. J.} and Alomari, R. S. and Chaudhary, V.},
  booktitle = {Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI)},
  pages = {202--210},
  projects = {lumbar},
  researcharea = {MI},
  tags = {medical imaging, spine imaging, semantic segmentation, hierarchical},
  title = {Lumbar Disc Localization and Labeling with a Probabilistic Model on both Pixel and Object Features},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/jcorso_MICCAI2008.pdf},
  venue = {MICCAI},
  volume = {LNCS 5241 Part 1},
  year = {2008}
}

@inproceedings{DuCoYuSPIE2008,
  author = {Dube, S. and {\bf Corso},{\bf J. J.} and Yuille, A. and Cloughesy, T. F. and El-Saden, S. and Sinha, U.},
  booktitle = {Proceedings of SPIE Conference on Medical Imaging},
  projects = {braintumor},
  researcharea = {MI},
  tags = {medical imaging, braintumor, hierarchical, segmentation},
  title = {{Hierarchical Segmentation of Malignant Gliomas Via Integrated Contextual Filter Response}},
  venue = {SPIE},
  year = {2008}
}

@inbook{DuCoClBOOK2007,
  author = {Dube, S. and {\bf Corso},{\bf J. J.} and Cloughesy, T. F. and El-Saden, S. and Yuille, A. and Sinha, U.},
  chapter = {Automated MR Image Processing and Analysis of Malignant Brain Tumors: Enabling Technology for Data Mining},
  projects = {braintumor},
  publisher = {American Institute of Physics},
  researcharea = {MI},
  tags = {medical imaging, data mining, braintumor, neuroimaging},
  title = {Data Mining Systems Analysis and Optimization in Biomedicine},
  venue = {BOOK},
  year = {2007}
}

@inproceedings{CoYuSiMICCAI2007,
  author = {{\bf Corso},{\bf J. J.} and Yuille, A. L. and Sicotte, N. L. and Toga, A.},
  booktitle = {{Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI)}},
  projects = {graphshifts,braintumor},
  researcharea = {MI},
  tags = {medical imaging, computer-aided diagnosis, neuroimaging, hierarchical, mrf, semantic segmentation},
  title = {{Detection and Segmentation of Pathological Structures by the Extended Graph-Shifts Algorithm}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/jcorso_MICCAI2007.pdf},
  venue = {MICCAI},
  year = {2007}
}

@article{CoShDuTMI2008,
  author = {{\bf Corso}, {\bf J. J.} and Sharon, E. and Dube, S. and El-Saden, S. and Sinha, U. and Yuille, A.},
  journal = {IEEE Transactions on Medical Imaging},
  number = {5},
  pages = {629--640},
  projects = {braintumor,supervoxels},
  researcharea = {MI},
  tags = {medical imaging, graphical models, hierarchical, neuroimaging, braintumor},
  title = {{Efficient Multilevel Brain Tumor Segmentation with Integrated Bayesian Model Classification}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/jcorso_TMI_braintumor.pdf},
  venue = {TMI},
  volume = {27},
  year = {2008}
}

@inproceedings{ArCoBuNSF2007,
  author = {Arnold, C. and {\bf Corso}, {\bf J. J.} and Bui, A.},
  booktitle = {{NSF Biomedical Informatics Workshop: Expanding Secondary Use of Health Data}},
  researcharea = {MI},
  tags = {medical imaging},
  title = {{An Unsupervised Approach to Automatic Image Annotation}},
  venue = {NSF},
  year = {2007}
}

@inproceedings{CoTuYuIPMI2007,
  author = {{\bf Corso},{\bf J. J.} and Tu, Z. and Yuille, A. and Toga, A. W.},
  booktitle = {Proceedings of Information Processing in Medical Imaging (IPMI)},
  pages = {183--197},
  projects = {graphshifts},
  researcharea = {MI},
  tags = {neuroimaging, medical imaging, hierarchical, semantic segmentation},
  title = {{Segmentation of Sub-Cortical Structures by the Graph-Shifts Algorithm}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/jcorso_ipmi2007.pdf},
  venue = {IPMI},
  volume = {LNCS 4584},
  year = {2007}
}

@inproceedings{CoShYuMICCAI2006,
  author = {{\bf Corso},{\bf J. J.} and Sharon, E. and Yuille, A. L.},
  booktitle = {{Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI)}},
  pages = {790--798},
  projects = {braintumor},
  researcharea = {MI},
  tags = {medical imaging, braintumor, neuroimaging, hierarchical},
  title = {{Multilevel Segmentation and Integrated Bayesian Model Classification with an Application to Brain Tumor Segmentation}},
  url = {http://web.eecs.umich.edu/~jjcorso/pubs/jcorso_MICCAI2006.pdf},
  venue = {MICCAI},
  volume = 2,
  year = {2006}
}

@inproceedings{LaHaMICCAI04,
  author = {Lau, W. W. and Ramey, N. A. and {\bf Corso},{\bf J. J.} and Thakor, N. and Hager, G. D.},
  booktitle = {Proceedings of Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
  projects = {surface},
  researcharea = {MI},
  tags = {medical imaging, stereo, endoscopy, tracking, reconstruction, deformable},
  title = {{Stereo-Based Endoscopic Tracking of Cardiac Surface Deformation}},
  venue = {MICCAI},
  year = {2004}
}