Fessler, Jeffrey A.: Journal Papers

Submitted journal papers

(Email "fessler AT umich DOT edu" for preprints)
  1. Se Young Chun, J A Fessler.
    Noise properties of motion-compensated tomographic image reconstruction methods.
    IEEE Trans. Med. Imag., ?. 2012. Submitted as TMI-2012-0261.
  2. Antonios Matakos, Sathish Ramani, J A Fessler.
    Image restoration using non-circulant system models.
    IEEE Trans. Im. Proc., ?. 2012. Submitted as TIP-08903-2012.
  3. M\'onica Abella, Juan Jos\'e Vaquero, Manuel Desco, J A Fessler.
    Simplified statistical image reconstruction for polyenergetic X-ray CT.
    Phys. Med. Biol., ?. 2012. Submitted as RANL-8SFF8A.
  4. Michael J Allison, Sathish Ramani, J A Fessler.
    Accelerated estimation of regularized MR coil sensitivities using augmented Lagrangian methods.
    IEEE Trans. Med. Imag., ?. 2012. Submitted as TMI-2012-0142
  5. Se Young Chun, J A Fessler, Yuni K Dewaraja.
    Correction for collimator-detector response in SPECT using point spread function template.
    IEEE Trans. Med. Imag., ?. 2012. Submitted as TMI-2012-0093
  6. Jung Kuk Kim, J A Fessler, Zhengya Zhang.
    Forward-projection architecture for fast iterative image reconstruction in X-ray CT.
    IEEE Trans. Sig. Proc., ?. 2012. Submitted as T-SP-13250-2012
  7. Daniel J Lingenfelter, J A Fessler, Clayton D Scott, Zhong He.
    Source detection performance prediction for a CdZnTe array.
    IEEE Trans. Nuc. Sci., ?. 2011.
  8. Daehyun Yoon, Hesamoddin Jahanian, J A Fessler, Douglas C Noll, Luis Hernandez-Garcia.
    Spatially selective PCASL with parallel excitation.
    Mag. Res. Med., ?. 2011. Submitted.
  9. Amanda K Funai, J A Fessler, William Grissom, Douglas C Noll.
    Regularized B1 mapping in MRI.
    IEEE Trans. Med. Imag., ?. 2009. Submitted as TMI-2009-0270
  10. Matthew W Jacobson, J A Fessler.
    Simultaneous statistical estimation of motion and activity in respiratory gated PET.
    IEEE Trans. Med. Imag., ?. 2007. Submitted.
  11. Ramkrishnan Narayanan, J A Fessler, Bing Ma, Hyunjin Park, Charles R Meyer.
    Mismatch location and scale selection for automatic intensity based image registration.
    Pattern Recognition, ?. 2007. Submitted.
  12. Dan Ruan, J A Fessler, James Balter, Marc Kessler.
    Nonrigid registration with regularization incorporating local tissue rigidity.
    Phys. Med. Biol., ?. 2006. Submitted.
  13. Sangwoo Lee, Gregory Lee, Valur Olafsson, J A Fessler, Douglas C Noll.
    A 2D k-space measurement method using pencil excitation.
    Mag. Res. Med., ?. 2006. Submitted.
  14. Sangwoo Lee, Douglas C Noll, J A Fessler.
    A robust, dynamic R2*-and-field-map-corrected image reconstruction for single shot self-refocusing trajectories at 3T.
    Mag. Res. Med., ?. 2006. Submitted.
  15. Jane E Huggins, Victor Solo, Se Young Chun, J A Fessler, Chandan Damannagari, Simon P Levine, Bernhard Graimann.
    Event detection in electrocorticogram using methods based on a two-covariance model.
    IEEE Trans. Neural Sys. Rehab. Eng., ?. 2007. Submitted.

In-press journal papers

  1. Feng Zhao, Douglas Noll, Jon-Frederick Nielsen, J A Fessler.
    Separate magnitude and phase regularization via compressed sensing.
    IEEE Trans. Med. Imag., ?. 2012. To appear.
  2. Daehyun Yoon, J A Fessler, Anna C Gilbert, Douglas C Noll.
     Fast joint design method for parallel excitation RF pulse and gradient waveforms considering off-resonance.
    Mag. Res. Med., ?. 2012. online as early view
  3. Se Young Chun, J A Fessler.
     Spatial resolution properties of motion-compensated image reconstruction methods.
    IEEE Trans. Med. Imag., ?. 2011. To appear.
  4. Sathish Ramani, Zhihao Liu, Jeffrey Rosen, Jon-Fredrik Nielsen, J A Fessler.
     Regularization parameter selection for nonlinear iterative image restoration and MRI reconstruction using GCV and SURE-based methods.
    IEEE Trans. Im. Proc., ?. 2012. To appear.

Published journal papers

Most of the links below are to the final published papers at the publisher's web site.
If you do not have access to those sites, you can probably find a reprint or preprint in this archive. If you find a preprint interesting, then please get the original because the preprint may differ from the final version.
  1. Sathish Ramani, J A Fessler.
     A splitting-based iterative algorithm for accelerated statistical X-ray CT reconstruction.
    IEEE Trans. Med. Imag., 31(3):677-88, Mar. 2012. (PubMed 22084046)
  2. Daniel J Lingenfelter, J A Fessler, Clayton D Scott, Zhong He.
     Asymptotic source detection performance of gamma-ray imaging systems under model mismatch.
    IEEE Trans. Sig. Proc., 59(11):5141-51, Nov. 2011.
  3. Catherine Kublik, Selim \Esedoglu, J A Fessler.
     Algorithms for area preserving flows.
    SIAM J. Sci. Comp., 33(5):2382-401, .. 2011.
  4. Xin He, J A Fessler, Lishui Cheng, Eric C Frey.
     Regularized image reconstruction algorithms for dual-isotope myocardial perfusion SPECT (MPS) imaging using a cross-tracer edge-preserving prior.
    IEEE Trans. Med. Imag., 30(6):1169-83, Jun. 2011. (PubMed 20952334)
  5. Sathish Ramani, J A Fessler.
     Parallel MR image reconstruction using augmented Lagrangian methods.
    IEEE Trans. Med. Imag., 30(3):694-706, Mar. 2011. Supplementary material here. (PubMed 21095861)
    Errata: Eqn. (8) should have a "Re()" (real part) around the middle term.
  6. Yong Long, J A Fessler, James M Balter.
     3D forward and back-projection for X-ray CT using separable footprints.
    IEEE Trans. Med. Imag., 29(11):1839-50, Nov. 2010. (PubMed 20529732)
    Errata: Ref [37] was NSS-MIC not ISBI.
  7. Daniel J Lingenfelter, J A Fessler, Clayton D Scott, Zhong He.
     Benefits of position-sensitive detectors for radioactive source detection.
    IEEE Trans. Sig. Proc., 58(9):4473-83, Sep. 2010.
  8. J A Fessler.
     Model-based image reconstruction for MRI.
    IEEE Sig. Proc. Mag., 27(4):81-9, Jul. 2010. Invited submission to special issue on medical imaging (PubMed 21135916)
    Errata: My version had 108 references but IEEE limited it to 30. The full version is online here. It is also on xplore as a "multimedia download."
  9. Yong Long, J A Fessler, James M Balter.
     Accuracy estimation for projection-to-volume targeting during rotational therapy: A feasibility study.
    Med. Phys., 37(6):2480-90, Jun. 2010. (PubMed 20632559)
    Errata: p2488 5th line of last paragraph on left column: "large" -> "small"
  10. John R Valenzuela, J A Fessler, Richard P Paxman.
     Joint estimation of Stokes images and aberrations from phase-diverse polarimetric measurements.
    J. Opt. Soc. Am. A, 27(5):1185-93, May 2010.
  11. Yuni K Dewaraja, Kenneth F Koral, J A Fessler.
     Regularized reconstruction in quantitative SPECT using CT side information from hybrid imaging.
    Phys. Med. Biol., 55(9):2523-9, May 2010. (PubMed 20393233)
  12. Joonki Noh, J A Fessler, Paul E Kinahan.
     Statistical sinogram restoration in dual-energy CT for PET attenuation correction.
    IEEE Trans. Med. Imag., 28(11):1688-702, Nov. 2009. (PubMed 19336292)
  13. William A Grissom, Dan Xu, Adam B Kerr, J A Fessler, Douglas C Noll.
     Fast large-tip-angle multidimensional and parallel RF pulse design in MRI.
    IEEE Trans. Med. Imag., 28(10):1548-59, Oct. 2009. (PubMed 19447704)
  14. Roshni Bhagalia, J A Fessler, Boklye Kim.
     Accelerated nonrigid intensity-based image registration using importance sampling.
    IEEE Trans. Med. Imag., 28(8):1208-16, Aug. 2009. (PubMed 19211343)
  15. D Ruan, J A Fessler, J M Balter, P J Keall.
     Real-time profiling of respiratory motion: baseline drift, frequency variation and fundamental pattern change.
    Phys. Med. Biol., 54(15):4777-92, Aug. 2009. (PubMed 19622852)
  16. Malakeh A Musheinesh, Charles J Divin, J A Fessler, Theodore B Norris.
     Time-reversal and model-based imaging in a THz waveguide.
    Optics Express, 17(16):13663-70, Aug. 2009. (PubMed 19654774)
  17. Aniket Joshi, Robert A Koeppe, J A Fessler, Michael Kilbourn.
     Signal separation and parameter estimation in non invasive dual-tracer PET scans using reference region approaches.
    J. Cerebral Blood Flow and Metabolism, 29(7):1346-57, Jul. 2009. (PubMed 19401708)
  18. Aniket D Joshi, Robert A Koeppe, J A Fessler.
     Reducing between scanner differences in multi-center PET studies.
    NeuroImage, 49(1):154-9, May 2009. (PubMed 19457369)
  19. Hugo R Shi, J A Fessler.
     Quadratic regularization design for 2D CT.
    IEEE Trans. Med. Imag., 28(5):645-56, May 2009. (PubMed 19272993)
    Errata: In (33), should be tan^{-1}(s/D_sd). In (40), the \Phi should be \phi. After (40), we divide by \rho *and multiply by \rho* so there should be another \rho in front of d\rho. In the same equation the phase term should be written F^j(\rho,\phi) to be consistent with (40). After (44) the integral should be dr' d\phi' not dr d\phi.
  20. Chun-yu Yip, Daehyun Yoon, Valur Olafsson, Sangwoo Lee, William A Grissom, J A Fessler, Douglas C Noll.
     Spectral-spatial pulse design for through-plane phase precompensatory slice selection in T2*-weighted functional MRI.
    Mag. Res. Med., 61(5):1137-47, May 2009. (PubMed 19267346)
  21. John Valenzuela, J A Fessler.
     Joint reconstruction of Stokes images from polarimetric measurements.
    J. Opt. Soc. Am. A, 26(4):962-8, Apr. 2009. (PubMed 19340271)
  22. Se Young Chun, J A Fessler.
     A simple regularizer for B-spline nonrigid image registration that encourages local invertibility.
    IEEE J. Sel. Top. Sig. Proc., 3(1):159-69, Feb. 2009. Special Issue on Digital Image Processing Techniques for Oncology. (PubMed 21179392)
  23. Amanda K Funai, J A Fessler, Desmond T B Yeo, Valur T Olafsson, Douglas C Noll.
     Regularized field map estimation in MRI.
    IEEE Trans. Med. Imag., 27(10):1484-94, Oct. 2008. (PubMed 18815100)
    Errata: ref [5] should be Barmet not Barnet, and last eqn. p1493 should have () instead of || in it.
  24. Valur T Olafsson, Douglas C Noll, J A Fessler.
     Fast joint reconstruction of dynamic $R_2^*$ and field maps in functional MRI.
    IEEE Trans. Med. Imag., 27(9):1177-88, Sep. 2008. (PubMed 18753040)
  25. Desmond T B Yeo, J A Fessler, Boklye Kim.
     Concurrent correction of geometric distortion and motion using the map-slice-to-volume method in EPI.
    Mag. Res. Im., 26(5):703-14, Jun. 2008. (PubMed 18280077)
  26. Dan Ruan, J A Fessler, James M Balter, R I Berbeco, S Nishioka, H Shirato.
     Inference of hysteretic respiratory tumour motion from external surrogates: A state augmentation approach.
    Phys. Med. Biol., 53(11):2923-36, Jun. 2008. (PubMed 18460744)
  27. Aniket Joshi, J A Fessler, Robert A Koeppe.
     Improving PET receptor binding estimates from Logan plots using principal component analysis.
    J. Cerebral Blood Flow and Metabolism, 28(4):852-65, Apr. 2008. (PubMed 18059434)
  28. William A Grissom, Chun-yu Yip, Steven M Wright, J A Fessler, Douglas C Noll.
     Additive angle method for fast large-tip-angle RF pulse design in parallel excitation.
    Mag. Res. Med., 59(4):779-87, Apr. 2008. (PubMed 18383288)
  29. Rongping Zeng, J A Fessler, James M Balter, P A Balter.
     Iterative sorting for four-dimensional CT images based on internal anatomy motion.
    Med. Phys., 35(3):917-26, Mar. 2008. (PubMed 18404928)
  30. Dan Ruan, J A Fessler, James M Balter.
     Mean position tracking of respiratory motion.
    Med. Phys., 35(2):782-92, Feb. 2008. (PubMed 18383701)
  31. Dan Ruan, J A Fessler, James M Balter.
     Real-time prediction of respiratory motion based on nonparametric local regression methods.
    Phys. Med. Biol., 52(23):7137-52, Dec. 2007. (PubMed 19622852)
  32. Desmond T B Yeo, Thomas L Chenevert, J A Fessler, Boklye Kim.
     Zero and first-order phase shift correction for field map estimation with dual-echo GRE using bipolar gradients.
    Mag. Res. Im., 25(9):1263-71, Nov. 2007. (PubMed 17442524)
  33. J A Fessler.
     On NUFFT-based gridding for non-Cartesian MRI.
    J. Mag. Res., 188(2):191-5, Oct. 2007. (PubMed 17689121)
    Errata: The Dirichlet kernel in (8) is K-periodic (as stated) only if N is odd. It is 2K-periodic if N is even. The "mod K" in (10) is not needed.
  34. Anastasia Yendiki, J A Fessler.
     Analysis of observer performance in unknown-location tasks for tomographic image reconstruction.
    J. Opt. Soc. Am. A, 24(12):B99-109, Dec. 2007. Special issue on Image Quality. (PubMed 18059919)
    Errata: The "psfrag replacement" typo in Fig. 1 was introduced by OSA after we proofed the paper.
  35. Matthew W Jacobson, J A Fessler.
     An expanded theoretical treatment of iteration-dependent majorize-minimize algorithms.
    IEEE Trans. Im. Proc., 16(10):2411-22, Oct. 2007. (PubMed 17926925)
  36. Chun-yu Yip, William A Grissom, J A Fessler, Douglas C Noll.
     Joint design of trajectory and RF pulses for parallel excitation.
    Mag. Res. Med., 58(3):598-604, Sep. 2007. (PubMed 17763362)
  37. Kenneth F Koral, James N Kritzman, Virginia E Rogers, Robert J Ackermann, J A Fessler.
     Optimizing the number of equivalent iterations of 3D OSEM in SPECT reconstruction of I-131 focal activities.
    Nucl. Instr. Meth. Phys. Res. A., 579(1):326-9, Aug. 2007.
  38. Yingying Zhang-O'Connor, J A Fessler.
     Fast predictions of variance images for fan-beam transmission tomography with quadratic regularization.
    IEEE Trans. Med. Imag., 26(3):335-46, Mar. 2007. (PubMed 17354639)
    Errata: the phantom used is NCAT, not Zubal
  39. Rongping Zeng, J A Fessler, James M Balter.
     Estimating 3-D respiratory motion from orbiting views by tomographic image registration.
    IEEE Trans. Med. Imag., 26(2):153-63, Feb. 2007. (PubMed 17304730)
    Errata: The "-ln" function in (9) is not essential and would be problematic if the correlation happened to be negative.
  40. Chun-yu Yip, J A Fessler, Douglas C Noll.
     Advanced three-dimensional tailored RF pulse for signal recovery in $T_2^*$-weighted functional magnetic resonance imaging.
    Mag. Res. Med., 56(5):1050-9, Nov. 2006. (PubMed 17041911)
  41. William Grissom, Chun-yu Yip, Zhenghui Zhang, V Andrew Stenger, J A Fessler, Douglas C Noll.
     Spatial domain method for the design of RF pulses in multi-coil parallel excitation.
    Mag. Res. Med., 56(3):620-9, Sep. 2006. (PubMed 16894579)
  42. Paul E Kinahan, Adam M Alessio, J A Fessler.
     Dual energy CT attenuation correction methods for quantitative assessment of response to cancer therapy with PET/CT imaging.
    Technology in Cancer Research and Treatment, 5(4):319-28, Aug. 2006. (PubMed 16866562)
  43. Dan Ruan, J A Fessler, James M Balter, Jan-Jakob Sonke.
     Exploring breathing pattern irregularity with projection-based method.
    Med. Phys., 33(7):2491-9, Jul. 2006. (PubMed 16898452)
  44. Bing Feng, J A Fessler, Michael A King.
     Incorporation of system resolution compensation (RC) in the ordered-subset transmission (OSTR) algorithm for transmission imaging in SPECT.
    IEEE Trans. Med. Imag., 25(7):941-9, Jul. 2006. (PubMed 16827494)
  45. Bing Feng, J A Fessler, P H Pretorius, R D Beach, G L Zeng, Michael A King.
     Evaluation of the ordered-subset transmission (OSTR) algorithm for transmission imaging on SPECT systems using axially overlapping cone-beams.
    IEEE Trans. Nuc. Sci., 53(3):1221-9, Jun. 2006.
  46. Michael Ting, Alfred O Hero, Danield Rugar, Chun-yu Yip, J A Fessler.
     Near optimal signal detection for finite state Markov signals with application to magnetic resonance force microscopy.
    IEEE Trans. Sig. Proc., 54(6):2049-62, Jun. 2006.
  47. Yingying Zhang-O'Connor, J A Fessler.
     Fourier-based forward and back-projectors in iterative fan-beam tomographic image reconstruction.
    IEEE Trans. Med. Imag., 25(5):582-9, May 2006. (PubMed 16689262)
  48. Sangtae Ahn, J A Fessler, Doron Blatt, Alfred O Hero.
     Convergent incremental optimization transfer algorithms: Application to tomography.
    IEEE Trans. Med. Imag., 25(3):283-96, Mar. 2006. (PubMed 16524085)
    Errata: IEEE mangled (11), which should say 0 <= x_j <= U.
  49. Yuni K Dewaraja, Michael Ljungberg, J A Fessler.
     3-D Monte Carlo-based scatter compensation in quantitative I-131 SPECT reconstruction.
    IEEE Trans. Nuc. Sci., 53(1):181-8, Feb. 2006.
  50. Anastasia Yendiki, J A Fessler.
     Analysis of observer performance in known-location tasks for tomographic image reconstruction.
    IEEE Trans. Med. Imag., 25(1):28-41, Jan. 2006. (PubMed 16398412)
  51. Chun-yu Yip, J A Fessler, Douglas C Noll.
     Iterative RF pulse design for multidimensional, small-tip-angle selective excitation.
    Mag. Res. Med., 54(4):908-17, Oct. 2005. (PubMed 16155881)
  52. J A Fessler, Sangwoo Lee, Valur T Olafsson, Hugo R Shi, Douglas C Noll.
     Toeplitz-based iterative image reconstruction for MRI with correction for magnetic field inhomogeneity.
    IEEE Trans. Sig. Proc., 53(9):3393-402, Sep. 2005.
    Errata: In (14), the t_i belongs within the exponent. ref [53] should be Barmet not Barnet. accept 2005-1-28, special issue: Signal Processing Aspects of Brain Imaging.
  53. Rongping Zeng, J A Fessler, James M Balter.
     Respiratory motion estimation from slowly rotating X-ray projections: Theory and simulation.
    Med. Phys., 32(4):984-91, Apr. 2005. (PubMed 15895581)
  54. Douglass C Noll, J A Fessler, Bradley P Sutton.
     Conjugate phase MRI reconstruction with spatially variant sample density correction.
    IEEE Trans. Med. Imag., 24(3):325-36, Mar. 2005. (PubMed 15754983)
  55. Ramkrishnan Narayanan, J A Fessler, Hyunjin Park, Charles R Meyer.
     Diffeomorphic nonlinear transformations: A local parametric approach for image registration.
    Information Processing in Medical Im., vol. {LNCS 3565}, pp. 174-85, 2005.
    Errata: in (6), |x| should be |x - x0|.
  56. J Webster Stayman, J A Fessler.
     Efficient calculation of resolution and covariance for fully-3D SPECT.
    IEEE Trans. Med. Imag., 23(12):1543-56, Dec. 2004. (PubMed 15575411)
  57. Joengtae Kim, J A Fessler.
     Intensity-based image registration using robust correlation coefficients.
    IEEE Trans. Med. Imag., 23(11):1430-44, Nov. 2004. (PubMed 15554130)
  58. Kisung Lee, Paul E Kinahan, J A Fessler, Robert S Miyaoka, Marie Janes, Tom K Lewellen.
     Pragmatic fully 3D image reconstruction for the MiCES mouse imaging PET scanner.
    Phys. Med. Biol., 49(19):4563-78, Oct. 2004. (PubMed 15552417)
  59. Kenneth F Koral, Anastasia Yendiki, Q Lin, Yuni K Dewaraja, J A Fessler.
     Determining total I-131 activity within a VoI using SPECT, a UHE collimator, OSEM, and a constant conversion factor.
    IEEE Trans. Nuc. Sci., 51(3):611-8, Jun. 2004.
  60. Bradley P Sutton, Douglas C Noll, J A Fessler.
     Dynamic field map estimation using a spiral-in / spiral-out acquisition.
    Mag. Res. Med., 51(6):1194-204, Jun. 2004. (PubMed 15170840)
  61. Anastasia Yendiki, J A Fessler.
     A comparison of rotation- and blob-based system models for 3D SPECT with depth-dependent detector response.
    Phys. Med. Biol., 49(11):2157-68, Jun. 2004.
  62. Saowapak Sotthivirat, J A Fessler.
     Penalized-likelihood image reconstruction for digital holography.
    J. Opt. Soc. Am. A, 21(5):737-50, May 2004. (PubMed 15139426)
  63. Sangtae Ahn, J A Fessler.
     Emission image reconstruction for randoms-precorrected PET allowing negative sinogram values.
    IEEE Trans. Med. Imag., 23(5):591-601, May 2004. (PubMed 15147012)
  64. Samuel Matej, J A Fessler, I G Kazantsev.
     Iterative tomographic image reconstruction using Fourier-based forward and back- projectors.
    IEEE Trans. Med. Imag., 23(4):401-12, Apr. 2004. (PubMed 15084066)
  65. J Webster Stayman, J A Fessler.
     Compensation for nonuniform resolution using penalized-likelihood reconstruction in space-variant imaging systems.
    IEEE Trans. Med. Imag., 23(3):269-84, Mar. 2004. (PubMed 15027520)
    Errata: ieee mangled the equation after (31); it should be F(l^j_0).
  66. Ling J Meng, W Leslie Rogers, Neal H Clinthorne, J A Fessler.
     Feasibility study of Compton scattering enhanced multiple pinhole imager for nuclear medicine.
    IEEE Trans. Nuc. Sci., 50(5):1609-17, Oct. 2003.
  67. Johan Nuyts, J A Fessler.
     A penalized-likelihood image reconstruction method for emission tomography, compared to post-smoothed maximum-likelihood with matched spatial resolution.
    IEEE Trans. Med. Imag., 22(9):1042-52, Sep. 2003. (PubMed 12956260)
    Errata: In (7), the +/- should just be a "-". (The "+" solution is unstable.)
  68. Idris A Elbakri, J A Fessler.
     Segmentation-free statistical image reconstruction for polyenergetic X-ray computed tomography with experimental validation.
    Phys. Med. Biol., 48(15):2543-78, Aug. 2003. (PubMed 12953909)
    Errata: In the last equation on p.~2462, the $a_{ij}^2$ should be $a_{ij} \sum_j a_{ij}$
  69. Sangtae Ahn, J A Fessler.
     Globally convergent image reconstruction for emission tomography using relaxed ordered subsets algorithms.
    IEEE Trans. Med. Imag., 22(5):613-26, May 2003. (PubMed 12846430)
  70. Saowapak Sotthivirat, J A Fessler.
     Relaxed ordered-subsets algorithm for penalized-likelihood image restoration.
    J. Opt. Soc. Am. A, 20(3):439-49, Mar. 2003. (PubMed 12630830)
  71. Bradley P Sutton, Douglas C Noll, J A Fessler.
     Fast, iterative image reconstruction for MRI in the presence of field inhomogeneities.
    IEEE Trans. Med. Imag., 22(2):178-88, Feb. 2003. (PubMed 12715994)
  72. J A Fessler, Bradley P Sutton.
     Nonuniform fast Fourier transforms using min-max interpolation.
    IEEE Trans. Sig. Proc., 51(2):560-74, Feb. 2003.
    Errata: Section II.E, L+2+J not L+1+J; same in Table I for "partial." After (33), 2(J+\beta L) should be J+2\beta L. Last sentence of p. 568, instead of "defined as in (18)", it should be: $b_n(\omega) = \exp{i \omega n} / \sqrt{N}$. In (6), the "1" is correct if N is odd, but for even N it should be +/-1.
  73. Daniel F Yu, J A Fessler.
     Mean and variance of coincidence photon counting with deadtime.
    Nucl. Instr. Meth. Phys. Res. A., 488(1-2):362-74, Aug. 2002.
  74. Saowapak Sotthivirat, J A Fessler.
     Image recovery using partitioned-separable paraboloidal surrogate coordinate ascent algorithms.
    IEEE Trans. Im. Proc., 11(3):306-17, Mar. 2002.
    Errata: In the conditions for the potential function preceding (40), the derivative of \psi is assumed to be nondecreasing (not convex!) so that \psi itself is convex. And the curvature function \omega should be nonincreasing (rather than nondecreasing).
  75. Daniel F Yu, J A Fessler.
     Edge-preserving tomographic reconstruction with nonlocal regularization.
    IEEE Trans. Med. Imag., 21(2):159-73, Feb. 2002. (PubMed 11929103)
  76. Idris A Elbakri, J A Fessler.
     Statistical image reconstruction for polyenergetic X-ray computed tomography.
    IEEE Trans. Med. Imag., 21(2):89-99, Feb. 2002. (PubMed 11929108)
    Errata: In (35), the numerator should be $\bar{Y}_i(s_i^n) + r_i)$.
  77. Claude Comtat, Paul E Kinahan, J A Fessler, Thomas Beyer, David W Townsend, Michel Defrise, Christian Michel.
     Clinically feasible reconstruction of 3d whole-body PET/CT data using blurred anatomical labels.
    Phys. Med. Biol., 47(1):1-20, Jan. 2002. (PubMed 11814220)
  78. Joengtae Kim, J A Fessler, Kwok L Lam, James M Balter, Randy K {Ten Haken}.
     A feasibility study of mutual information based set-up error estimator for radiotherapy.
    Med. Phys., 28(12):2507-17, Dec. 2001.
  79. Scott J Wilderman, J A Fessler, Neal H Clinthorne, James W LeBlanc, W Leslie Rogers.
     Improved modeling of system response in list mode EM reconstruction of Compton scatter camera images.
    IEEE Trans. Nuc. Sci., 48(1):111-6, Feb. 2001.
  80. Daniel F Yu, J A Fessler, Edward P Ficaro.
     Maximum likelihood transmission image reconstruction for overlapping transmission beams.
    IEEE Trans. Med. Imag., 19(11):1094-1105, Nov. 2000.
  81. J Webster Stayman, J A Fessler.
     Regularization for uniform spatial resolution properties in penalized-likelihood image reconstruction.
    IEEE Trans. Med. Imag., 19(6):601-15, Jun. 2000.
  82. Daniel F Yu, J A Fessler.
     Mean and variance of singles photon counting with deadtime.
    Phys. Med. Biol., 45(7):2043-56, Jul. 2000.
  83. J A Fessler, Hakan \Erdogan, Wei Biao Wu.
     Exact distribution of edge-preserving MAP estimators for linear signal models with Gaussian measurement noise.
    IEEE Trans. Im. Proc., 9(6):1049-56, Jun. 2000.
  84. Doo Yong Park, J A Fessler, Michael G Yost, Steven P Levine.
     Tomographic reconstruction of tracer gas concentration profiles in a room with the use of a single OP-FTIR and two iterative algorithms: ART and PWLS.
    J Air Waste Manag Assoc, 50(3):357-70, Mar. 2000.
  85. Hakan \Erdogan, J A Fessler.
     Ordered subsets algorithms for transmission tomography.
    Phys. Med. Biol., 44(11):2835-51, Nov. 1999.
  86. Hakan \Erdogan, J A Fessler.
     Monotonic algorithms for transmission tomography.
    IEEE Trans. Med. Imag., 18(9):801-14, Sep. 1999.
    Errata: (12) the \Phi should be L
  87. Mehmet Yavuz, J A Fessler.
     Penalized-likelihood estimators and noise analysis for randoms-precorrected PET transmission scans.
    IEEE Trans. Med. Imag., 18(8):665-74, Aug. 1999.
    Errata: the \bar{\mu}'s after (30) should be \check{\mu}'s.
  88. J A Fessler, Scott D Booth.
     Conjugate-gradient preconditioning methods for shift-variant PET image reconstruction.
    IEEE Trans. Im. Proc., 8(5):688-99, May 1999.
  89. Alfred O Hero, Robinson Piramuthu, Steven R Titus, J A Fessler.
     Minimax emission computed tomography using high resolution anatomical side information and B-spline models.
    IEEE Trans. Info. Theory, 45(3):920-38, Apr. 1999.
  90. Mehmet Yavuz, J A Fessler.
     Statistical image reconstruction methods for randoms-precorrected PET scans.
    Med. Im. Anal., 2(4):369-78, Dec. 1998.
  91. J A Fessler.
     On the convergence of mean field procedures for MRF's.
    IEEE Trans. Im. Proc., 7(6):917, Jun. 1998.
  92. J A Fessler.
     Spatial resolution and noise tradeoffs in pinhole imaging system design: A density estimation approach.
    Optics Express, 2(6):237-53, Mar. 1998.
    Errata: In the last line of the equations following (22), the \beta should be \beta^2.
  93. Kenneth F Koral, S Lin, J A Fessler, M S Kaminski, Richard L Wahl.
     Preliminary results from intensity-based CT-SPECT fusion in I-131 anti-B1 monoclonal-antibody therapy of lymphoma.
    Cancer, 80(S12):2538-44, Dec. 1997.
  94. Mark C Wrobel, Neal H Clinthorne, J A Fessler, Yong Zhang, Scott J Wilderman, W Leslie Rogers.
     A proposed method for correcting aperture penetration in high energy slit aperture and pinhole SPECT.
    IEEE Trans. Nuc. Sci., 44(4):1564-70, Aug. 1997.
  95. Paul E Kinahan, J A Fessler, Joel S Karp.
     Statistical image reconstruction in PET with compensation for missing data.
    IEEE Trans. Nuc. Sci., 44(4):1552-7, Aug. 1997.
  96. Mehmet Yavuz, J A Fessler.
     New statistical models for randoms-precorrected PET scans.
    Information Processing in Medical Im., J Duncan and G Gindi, editor. Springer-Verlag, Berlin, pp. 190-203, 1997.
  97. J A Fessler, Edward P Ficaro, Neal H Clinthorne, Kenneth Lange.
     Grouped-coordinate ascent algorithms for penalized-likelihood transmission image reconstruction.
    IEEE Trans. Med. Imag., 16(2):166-75, Apr. 1997.
  98. J A Fessler.
     Invited discussion of ``The EM algorithm - An old folk song sung to a fast new tune'' by X.-L. Meng and D. van Dyk.
    J. Royal Stat. Soc. Ser. B, 59(3):553-4, .. 1997.
  99. Alfred O Hero, Mohammed Usman, Anne C Sauve, J A Fessler.
     Recursive algorithms for computing the Cramer-Rao bound.
    IEEE Trans. Sig. Proc., 45(3):803-7, Mar. 1997.
  100. John M Ollinger, J A Fessler.
     Positron emission tomography.
    IEEE Sig. Proc. Mag., 14(1):43-55, Jan. 1997.
  101. David E Kuhl, Satoshi Minoshima, J A Fessler, Kirk A Frey, N L Foster, Edward P Ficaro, David M Wieland, Robert A Koeppe.
     In vivo mapping of cholinergic terminals in normal aging, Alzheimer's disease and Parkinson's disease.
    Annals of Neurology, 40(3):399-410, Sep. 1996.
  102. J A Fessler, W Leslie Rogers.
     Spatial resolution properties of penalized-likelihood image reconstruction methods: Space-invariant tomographs.
    IEEE Trans. Im. Proc., 5(9):1346-58, Sep. 1996.
    Errata: in equation following (35), \theta_k should be \theta_l
  103. Alfred O Hero, J A Fessler, Mohammed Usman.
     Exploring estimator bias-variance tradeoffs using the uniform CR bound.
    IEEE Trans. Sig. Proc., 44(8):2026-41, Aug. 1996.
    Errata: The lines on p. 2030 4) Compute the point (delta, B(theta, delta)) via B(theta, delta) = lamda^2 * xbar' * Fy * xbar should read B(theta, delta) = lamda^2 * ybar' * Fy * ybar
  104. J A Fessler.
     Mean and variance of implicitly defined biased estimators (such as penalized maximum likelihood): Applications to tomography.
    IEEE Trans. Im. Proc., 5(3):493-506, Mar. 1996.
  105. Edward P Ficaro, J A Fessler, Paul D Shreve, J N Kritzman, P A Rose, James R Corbett.
     Simultaneous transmission/emission myocardial perfusion tomography: Diagnostic accuracy of attenuation-corrected 99m-Tc-Sestamibi SPECT.
    Circulation, 93(3):463-73, Feb. 1996.
  106. J A Fessler.
     Hybrid Poisson/polynomial objective functions for tomographic image reconstruction from transmission scans.
    IEEE Trans. Im. Proc., 4(10):1439-50, Oct. 1995.
    Errata: The last figure in the published version of this paper was inadvertently a duplicate of Fig. 7. Here is a correct version of Fig. 8, which was printed in Sep. 1996 T-IP.
  107. Kenneth Lange, J A Fessler.
     Globally convergent algorithms for maximum a posteriori transmission tomography.
    IEEE Trans. Im. Proc., 4(10):1430-8, Oct. 1995.
  108. J A Fessler, Alfred O Hero.
     Penalized maximum-likelihood image reconstruction using space-alternating generalized EM algorithms.
    IEEE Trans. Im. Proc., 4(10):1417-29, Oct. 1995.
    Errata: The powers of 2 in the triangle inequalities on p.\ 1427 should not be there. Condition 2 should also include the requirement that \nabla^{10}\phi be continuous in \emph{both} arguments, i.e. in R_S \times R^p There should not be any 1/2 in the definition of J on p.\ 1426. The plus before the final quadratic form in (38) should be a minus. The second $\theta_k$ in the proof of Lemma 6 needs a $^{\infty}$. The final argument in the proof of Lemma 6 applies only to surrogate functions that are separable in their first argument. :-(
  109. Edward P Ficaro, J A Fessler, Robert J Ackerman, W Leslie Rogers, James R Corbett, Markus Schwaiger.
     Simultaneous transmission-emission Tl-201 cardiac SPECT: Effect of attenuation correction on myocardial tracer distribution.
    J. Nuc. Med., 36(6):921-31, Jun. 1995.
  110. Alfred O Hero, J A Fessler.
     Convergence in norm for alternating expectation-maximization (EM) type algorithms.
    Statistica Sinica, 5(1):41-54, Jan. 1995.
  111. J A Fessler, Alfred O Hero.
     Space-alternating generalized expectation-maximization algorithm.
    IEEE Trans. Sig. Proc., 42(10):2664-77, Oct. 1994.
    Errata: The equation immediately below eqn. (18) is unnecessary. As written it suggests we foolishly replace some of the pixel estimates with "old" values, when of course we do not. The newer version that appears in the T-IP paper is correct, and supersedes the T-SP version. The proof of Theorem 2 incorrectly states that the eigenvalues of the Gauss-Siedel matrix are real. They can be complex, so the proof only applies to cases where the maximimum magnitude eigenvalue is real. In App. B, (1+i mod K) should be 1+(i mod K).
  112. Alfred O Hero, J A Fessler.
     A recursive algorithm for computing Cramer-Rao-type bounds on estimator covariance.
    IEEE Trans. Info. Theory, 40(4):1205-10, Jul. 1994.
  113. J A Fessler.
     Penalized weighted least-squares image reconstruction for positron emission tomography.
    IEEE Trans. Med. Imag., 13(2):290-300, Jun. 1994.
    Errata: In the equation preceding (12), the first '+' should be a '-'.
  114. Ping C Chiao, W Leslie Rogers, J A Fessler, Neal H Clinthorne, Alfred O Hero.
     Model-based estimation with boundary side information or boundary regularization.
    IEEE Trans. Med. Imag., 13(2):227-34, Jun. 1994.
  115. Ping C Chiao, W Leslie Rogers, Neal H Clinthorne, J A Fessler, Alfred O Hero.
     Model-based estimation for dynamic cardiac studies using ECT.
    IEEE Trans. Med. Imag., 13(2):217-26, Jun. 1994.
  116. Edward P Ficaro, J A Fessler, W Leslie Rogers, Markus Schwaiger.
     Comparison of Americium-241 and Technicium-99m as transmission sources for attenuation correction of Thallium-201 SPECT imaging of the heart.
    J. Nuc. Med., 35(4):652-63, Apr. 1994.
  117. David E Kuhl, Robert A Koeppe, J A Fessler, Satoshi Minoshima, Robert J Ackerman, James E Carey, David L Gildersleeve, Kirk A Frey, David M Wieland.
     In vivo mapping of cholinergic neurons in the human brain using SPECT and IBVM.
    J. Nuc. Med., 35(3):405-10, Mar. 1994.
  118. J A Fessler, Neal H Clinthorne, W Leslie Rogers.
     On complete data spaces for PET reconstruction algorithms.
    IEEE Trans. Nuc. Sci., 40(4):1055-61, Aug. 1993.
  119. J A Fessler.
     Tomographic reconstruction using information weighted smoothing splines.
    Information Processing in Medical Im., H H Barrett and A F Gmitro, editor. Springer-Verlag, Berlin, pp. 372-86, 1993.
    Errata: 2nd line of (5) should have been $\tau_i^r$ not $\tau_i^l$. The definition of the gap width $g_i = \tau_{i+1}^l - \tau_i^r$ was omitted.
  120. J A Fessler, Neal H Clinthorne, W Leslie Rogers.
     Regularized emission image reconstruction using imperfect side information.
    IEEE Trans. Nuc. Sci., 39(5):1464-71, Oct. 1992.
  121. J A Fessler, Albert Macovski.
     Object-based 3-D reconstruction of arterial trees from magnetic resonance angiograms.
    IEEE Trans. Med. Imag., 10(1):25-39, Mar. 1991.
  122. J A Fessler.
     Nonparametric fixed-interval smoothing of nonlinear vector-valued measurements.
    IEEE Trans. Sig. Proc., 39(4):907-13, Apr. 1991.
  123. J A Fessler.
     Nonparametric fixed-interval smoothing with vector splines.
    IEEE Trans. Sig. Proc., 39(24):852-9, Apr. 1991.
  124. Yoram Bresler, J A Fessler, Albert Macovski.
     A Bayesian approach to reconstruction from incomplete projections of a multiple object 3-D domain.
    IEEE Trans. Patt. Anal. Mach. Int., 11(8):840-58, Aug. 1989.
  125. Yoram Bresler, J A Fessler, Albert Macovski.
     Model based estimation techniques for 3-D reconstruction from projections.
    Machine Vision and Applications, 1(2):115-26, Jun. 1988.

Abandoned papers

  1. J A Fessler.
     Variance images for penalized-likelihood image reconstruction.
    Originally submitted to T-MI in 1997. It required a major revision that I will never complete because this work was superceded by Yingying Zhang-O'Connor's Mar. 2007 T-MI paper on fast variance prediction.
  2. D Y Park, M G Yost, J A Fessler, Steven P Levine.
    Development and evaluation of an overlapped multiple emitting ray (OMER) geometry for application of open path FTIR with computed tomographic method in workplaces.
    J. Air Wast Manag. Assoc., .. 1997. I do not know what actually happened to this paper. The first author had told me it was accepted, but it never appeared.
  3. J A Fessler.
     Suboptimality of the truncated SVD for ill-conditioned inverse problems.
    A version of this paper was accepted for publication in IEEE Trans. on Image Processing. When the proofs arrived, I realized the main inequality was backwards, something that neither the authors nor the reviewers had noticed previously. We withdrew the paper...
  4. J A Fessler.
     Noniterative tomographic reconstruction using simultaneous weighted spline smoothing and deconvolution.
    An extension of my 1993 IPMI paper that I never finished.
  5. J A Fessler.
     Unified reconstruction-segmentation for PET attenuation correction.
    I prepared this in about 1992 as a longer version of my NSS/MIC presentation that year. I will never finish it; PET-CT made it irrelevant.

Rejected journal papers

  1. J A Fessler.
     Equivalence of pixel-driven and rotation-based backprojectors for tomographic image reconstruction.
    Rejected by IEEE Transactions on Medical Imaging.
  2. J A Fessler.
     On weighted least squares tomographic reconstruction and the ``consistency condition'' of Chinn and Huang.
    Rejected by IEEE Signal Processing Letters.
  3. Mohammed Usman, Alfred O Hero, J A Fessler.
     Application of the uniform CR bound for SPECT performance evaluation and system design.
    Rejected by IEEE Transactions on Medical Imaging.
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