GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis (Invited Paper)
Yufeng Gu, Arun Subramaniyan, Tim Dunn, Alireza Khadem, Kuan-yu Chen, Somnath Paul, Md Vasimuddin, Sanchit Misra, David Blaauw, Satish Narayanasamy, Reetuparna Das
Communications of the ACM, 2025, IF=11.1
CACM 2025 /
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University News
DX100: A Programmable Data Access Accelerator for Indirection
Alireza Khadem, Kamalavasan Kamalakkannan, Zhenyan Zhu, Akash Poptani, Yufeng Gu, Jered Benjamin Dominguez-Trujillo, Nishil Talati, Daichi Fujiki, Scott Mahlke, Galen Shipman, Reetuparna Das 52nd ACM/IEEE International Symposium on Computer Architecture (ISCA), 2025
ISCA 2025 /
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PIM Is All You Need: A CXL-Enabled GPU-Free System for Large Language Model Inference
Yufeng Gu*, Alireza Khadem*, Sumanth Umesh, Ning Liang, Xavier Servot, Onur Mutlu, Ravi Iyer, and Reetuparna Das
30th ACM International Conference on Architectural Support for Programming Languages and Operating Systems (ASPLOS), 2025
ASPLOS 2025 /
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Multi-Dimensional Vector ISA Extension for Mobile In-Cache Computing
Alireza Khadem, Daichi Fujiki, Hilbert Chen, Yufeng Gu, Nishil Talati, Scott Mahlke, Reetuparna Das
IEEE International Symposium on High-Performance Computer Architecture (HPCA), 2025
HPCA 2025 /
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Distinguished Artifact Honorable Mention
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis
Yufeng Gu, Arun Subramaniyan, Tim Dunn, Alireza Khadem, Kuan-yu Chen, Somnath Paul, Md Vasimuddin, Sanchit Misra, David Blaauw, Satish Narayanasamy, Reetuparna Das
ACM/IEEE 50th International Symposium on Computer Architecture (ISCA), 2023
ISCA 2023 /
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Lightning Talk /
Communications of ACM Research Highlights /
Technical Perspective
GenomicsBench: A Benchmark Suite for Genomics
Arun Subramaniyan, Yufeng Gu, Tim Dunn, Somnath Paul, Md Vasimuddin, Sanchit Misra, Satish Narayanasamy, David Blaauw, Reetuparna Das
IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), 2021
ISPASS 2021 /
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Lightning Talk
Multi-site fMRI Analysis Using Privacy-preserving Federated Learning and Domain Adaptation: ABIDE Results
Xiaoxiao Li, Yufeng Gu, Nicha Dvornek, Lawrence Staib, Pamela Ventola, James S. Duncan
Medical Image Analysis, 2020, IF=13.8
MedIA 2020 /
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